Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors
The study of somatic genetic alterations in tumors contributes to the understanding and management of cancer. Genetic alterations, such us copy number or copy neutral changes, generate allelic imbalances (AIs) that can be determined using polymorphic markers. Here we report the development of a simp...
| Authors: | ; ; ; ; ; ; |
|---|---|
| Format: | Article |
| Status: | Published version |
| Publication date: | 2012 |
| Country: | España |
| Institution: | Universidad de Barcelona |
| Repository: | Dipòsit Digital de la UB |
| OAI Identifier: | oai:diposit.ub.edu:2445/126517 |
| Online Access: | https://hdl.handle.net/2445/126517 |
| Access Level: | Open access |
| Keyword: | Neurofibromatosi Reacció en cadena de la polimerasa Neurofibromatosis Polymerase chain reaction |
| _version_ | 1878736423679426560 |
|---|---|
| author | Garcia Linares, Carles |
| author2 | Mercadé, Jaume Gel Moreno, Bernat Biayna, Josep Terribas Pérez, Ernest Lázaro García, Conxi Serra Arenas, Eduard |
| author2_role | author author author author author author |
| author_browse | Biayna, Josep Garcia Linares, Carles Gel Moreno, Bernat Lázaro García, Conxi Mercadé, Jaume Serra Arenas, Eduard Terribas Pérez, Ernest |
| author_facet | Garcia Linares, Carles Mercadé, Jaume Gel Moreno, Bernat Biayna, Josep Terribas Pérez, Ernest Lázaro García, Conxi Serra Arenas, Eduard |
| author_role | author |
| collection | Dipòsit Digital de la UB |
| description | The study of somatic genetic alterations in tumors contributes to the understanding and management of cancer. Genetic alterations, such us copy number or copy neutral changes, generate allelic imbalances (AIs) that can be determined using polymorphic markers. Here we report the development of a simple set of calculations for analyzing microsatellite multiplex PCR data from control-tumor pairs that allows us to obtain accurate information not only regarding the AI status of tumors, but also the percentage of tumor-infiltrating normal cells, the locus copy-number status and the mechanism involved in AI. We validated this new approach by re-analyzing a set of Neurofibromatosis type 1-associated dermal neurofibromas and comparing newly generated data with results obtained for the same tumors in a previous study using MLPA, Paralog Ratio Analysis and SNP-array techniques. Microsatellite multiplex PCR analysis (MMPA) should be particularly useful for analyzing specific regions of the genome containing tumor suppressor genes and also for determining the percentage of infiltrating normal cells within tumors allowing them to be sorted before they are analyzed by more expensive techniques. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | ES_8ebeaf3f9e4ceddcf35b856d9d1d8ef2 |
| institution | Universidad de Barcelona |
| instname_str | Universidad de Barcelona |
| network_acronym_str | ES |
| network_name_str | España |
| oai_identifier_str | oai:diposit.ub.edu:2445/126517 |
| publishDate | 2012 |
| publishDateSort | 2012 |
| publisher | Public Library of Science (PLoS) |
| publisherStr | Public Library of Science (PLoS) |
| reponame_str | Dipòsit Digital de la UB |
| spelling | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors Garcia Linares, Carles Mercadé, Jaume Gel Moreno, Bernat Biayna, Josep Terribas Pérez, Ernest Lázaro García, Conxi Serra Arenas, Eduard Neurofibromatosi Reacció en cadena de la polimerasa Neurofibromatosis Polymerase chain reaction The study of somatic genetic alterations in tumors contributes to the understanding and management of cancer. Genetic alterations, such us copy number or copy neutral changes, generate allelic imbalances (AIs) that can be determined using polymorphic markers. Here we report the development of a simple set of calculations for analyzing microsatellite multiplex PCR data from control-tumor pairs that allows us to obtain accurate information not only regarding the AI status of tumors, but also the percentage of tumor-infiltrating normal cells, the locus copy-number status and the mechanism involved in AI. We validated this new approach by re-analyzing a set of Neurofibromatosis type 1-associated dermal neurofibromas and comparing newly generated data with results obtained for the same tumors in a previous study using MLPA, Paralog Ratio Analysis and SNP-array techniques. Microsatellite multiplex PCR analysis (MMPA) should be particularly useful for analyzing specific regions of the genome containing tumor suppressor genes and also for determining the percentage of infiltrating normal cells within tumors allowing them to be sorted before they are analyzed by more expensive techniques. Public Library of Science (PLoS) https://hdl.handle.net/2445/126517 |
| spellingShingle | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors Garcia Linares, Carles Neurofibromatosi Reacció en cadena de la polimerasa Neurofibromatosis Polymerase chain reaction |
| status_str | publishedVersion |
| title | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| title_full | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| title_fullStr | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| title_full_unstemmed | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| title_short | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| title_sort | Applying Microsatellite Multiplex PCR Analysis (MMPA) for Determining Allele Copy-Number Status and Percentage of Normal Cells within Tumors |
| topic | Neurofibromatosi Reacció en cadena de la polimerasa Neurofibromatosis Polymerase chain reaction |
| topic_facet | Neurofibromatosi Reacció en cadena de la polimerasa Neurofibromatosis Polymerase chain reaction |
| url | https://hdl.handle.net/2445/126517 |