A network analysis to identify mediators of germline-driven differences in breast cancer prognosis.

Identifying the underlying genetic drivers of the heritability of breast cancer prognosis remains elusive. We adapt a network-based approach to handle underpowered complex datasets to provide new insights into the potential function of germline variants in breast cancer prognosis. This network-based...

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Detalhes bibliográficos
Autores: Escala-Garcia, Maria; Abraham, Jean; Andrulis, Irene L; Anton-Culver, Hoda; Arndt, Volker; Ashworth, Alan; Auer, Paul L; Auvinen, Päivi; Beckmann, Matthias W; Beesley, Jonathan; Behrens, Sabine; Benitez, Javier; Bermisheva, Marina; Blomqvist, Carl; Blot, William; Bogdanova, Natalia V; Bojesen, Stig E; Bolla, Manjeet K; Børresen-Dale, Anne-Lise; Brauch, Hiltrud; Brenner, Hermann; Brucker, Sara Y; Burwinkel, Barbara; Caldas, Carlos; Canzian, Federico; Chang-Claude, Jenny; Chanock, Stephen J; Chin, Suet-Feung; Clarke, Christine L; Couch, Fergus J; Cox, Angela; Cross, Simon S; Czene, Kamila; Daly, Mary B; Dennis, Joe; Devilee, Peter; Dunn, Janet A; Dunning, Alison M; Dwek, Miriam; Earl, Helena M; Eccles, Diana M; Eliassen, A Heather; Ellberg, Carolina; Evans, D Gareth; Fasching, Peter A; Figueroa, Jonine; Flyger, Henrik; Gago-Dominguez, Manuela; Gapstur, Susan M; García-Closas, Montserrat; García-Sáenz, José A; Gaudet, Mia M; George, Angela; Giles, Graham G; Goldgar, David E; González-Neira, Anna; Grip, Mervi; Guénel, Pascal; Guo, Qi; Haiman, Christopher A; Håkansson, Niclas; Hamann, Ute; Harrington, Patricia A; Hiller, Louise; Hooning, Maartje J; Hopper, John L; Howell, Anthony; Huang, Chiun-Sheng; Huang, Guanmengqian; Hunter, David J; Jakubowska, Anna; John, Esther M; Kaaks, Rudolf; Kapoor, Pooja Middha; Keeman, Renske; Kitahara, Cari M; Kraft, Peter; Lambrechts, Diether; Le Marchand, Loic; Lejbkowicz, Flavio; Lindblom, Annika; Lubiński, Jan; Mannermaa, Arto; Manoochehri, Mehdi; Manoukian, Siranoush; Margolin, Sara; Martinez, Maria Elena; Maurer, Tabea; Mavroudis, Dimitrios; Meindl, Alfons; Milne, Roger L; Mulligan, Anna Marie; Neuhausen, Susan L; Nevanlinna, Heli; Newman, William G; Olshan, Andrew F; Olson, Janet E; Olsson, Håkan; Orr, Nick; Peterlongo, Paolo; Petridis, Christos; Prentice, Ross L; Presneau, Nadege; Punie, Kevin; Ramachandran, Dhanya; Rennert, Gad; Romero, Atocha; Sachchithananthan, Mythily; Saloustros, Emmanouil; Sawyer, Elinor J; Schmutzler, Rita K; Schwentner, Lukas; Scott, Christopher; Simard, Jacques; Sohn, Christof; Southey, Melissa C; Swerdlow, Anthony J; Tamimi, Rulla M; Tapper, William J; Teixeira, Manuel R; Terry, Mary Beth; Thorne, Heather; Tollenaar, Rob A E M; Tomlinson, Ian; Troester, Melissa A; Truong, Thérèse; Turnbull, Clare; Vachon, Celine M; van der Kolk, Lizet E; Wang, Qin; Winqvist, Robert; Wolk, Alicja; Yang, Xiaohong R; Ziogas, Argyrios; Pharoah, Paul D P; Hall, Per; Wessels, Lodewyk F A; Chenevix-Trench, Georgia; Bader, Gary D; Dörk, Thilo; Easton, Douglas F; Canisius, Sander; Schmidt, Marjanka K; Gonzalez Neira, Anna; Andrulis, Irene L.; Auer, Paul L.; Beckmann, Matthias W.; Bogdanova, Natalia V.; Bojesen, Stig E.; Bolla, Manjeet K.; Brucker, Sara Y.; Chanock, Stephen J.; Clarke, Christine L.; Couch, Fergus J.; Cross, Simon S.; Daly, Mary B.; Dunn, Janet A.; Dunning, Alison M.; Earl, Helena M.; Eccles, Diana M.; Eliassen, A. Heather; Evans, D. Gareth; Fasching, Peter A.; Gapstur, Susan M.; García-Sáenz, José A.; Gaudet, Mia M.; Giles, Graham G.; Goldgar, David E.; Haiman, Christopher A.; Harrington, Patricia A.; Hooning, Maartje J.; Hopper, John L.; Hunter, David J.; John, Esther M.; Kitahara, Cari M.; Koppert, Linetta B; Kristensen, Vessela N; Milne, Roger L.; Neuhausen, Susan L.; Newman, William G.; Olshan, Andrew F.; Olson, Janet E.; Prentice, Ross L.; Sawyer, Elinor J.; Schmutzler, Rita K.; Southey, Melissa C.; Swerdlow, Anthony J.; Tamimi, Rulla M.; Tapper, William J.; Tollenaar, Rob A. E. M.; Troester, Melissa A.; Vachon, Celine M.; van der Kolk, Lizet E.; Yang, Xiaohong R.; Pharoah, Paul D. P.; Wessels, Lodewyk F. A.; Bader, Gary D.; Easton, Douglas F.; Schmidt, Marjanka K.
Tipo de documento: Artigo
Data de publicação:2020
País:España
Recursos:Instituto de Salud Carlos III (ISCIII)
Repositório:Repisalud
Idioma:Inglês
OAI Identifier:oai:repisalud.isciii.es:20.500.12105/12181
Acesso em linha:http://hdl.handle.net/20.500.12105/12181
Nível de acesso:Acesso aberto
Palavra-chave:Genetic Variation
Genome-Wide Association Study
Germ Cells
Apoptosis
Breast Neoplasms
Circadian Clocks
Computational Biology
Female
GTP-Binding Protein alpha Subunits
GTP-Binding Protein alpha Subunits, Gq-G11
Gene Regulatory Networks
Genotype
Humans
Prognosis
Receptors, Estrogen
Signal Transduction
Descrição
Resumo:Identifying the underlying genetic drivers of the heritability of breast cancer prognosis remains elusive. We adapt a network-based approach to handle underpowered complex datasets to provide new insights into the potential function of germline variants in breast cancer prognosis. This network-based analysis studies ~7.3 million variants in 84,457 breast cancer patients in relation to breast cancer survival and confirms the results on 12,381 independent patients. Aggregating the prognostic effects of genetic variants across multiple genes, we identify four gene modules associated with survival in estrogen receptor (ER)-negative and one in ER-positive disease. The modules show biological enrichment for cancer-related processes such as G-alpha signaling, circadian clock, angiogenesis, and Rho-GTPases in apoptosis.