Cooperativity in Hydrogen-Bonded Macrocycles Derived from Nucleobases

Introducing a rigid linear π-conjugated acetylene linker into a supramolecular building block consisting of a hydrogen-bond donor side and a hydrogen-bond acceptor side yields a decrease in cooperativity in the resulting formed quartet. This follows from our Kohn-Sham molecular orbital and Voronoi d...

Full description

Bibliographic Details
Authors: Almacellas, David; van der Lubbe, Stephanie C. C.; Grosch, Alice A.; Tsagri, Iris; Fonseca Guerra, Célia; Poater i Teixidor, Jordi
Format: Article
Status:Published version
Publication date:2024
Country:España
Institution:Universidad de Barcelona
Repository:Dipòsit Digital de la UB
OAI Identifier:oai:diposit.ub.edu:2445/218759
Online Access:https://hdl.handle.net/2445/218759
Access Level:Open access
Keyword:Hidrogen
ADN
Química supramolecular
Hydrogen
DNA
Supramolecular chemistry
Description
Summary:Introducing a rigid linear π-conjugated acetylene linker into a supramolecular building block consisting of a hydrogen-bond donor side and a hydrogen-bond acceptor side yields a decrease in cooperativity in the resulting formed quartet. This follows from our Kohn-Sham molecular orbital and Voronoi deformation density analyses of hydrogen-bonded macrocycles based on guanine and cytosine nucleobases. The acetylene linker abstracts electron density from the hydrogen-bond acceptor and donor, making the hydrogen-bond acceptor more negatively charged and the hydrogen-bond donor more positively charged and hence suppressing the donor–acceptor charge transfer interaction between the interacting fragments. This, ultimately, hampers the cooperativity in the hydrogen-bonded macrocycle. We envision that these findings could open the door to new design principles for the development of novel hydrogen-bond supramolecular macrocycles.